Genomics to Notebook (g2nb) bridges Galaxy + Jupyter!
Run Galaxy tools as notebook cells, explore histories, integrate IGV, Cytoscape, and more, all from a single interface. No coding required (but Python-friendly, too)!
Don’t forget: CoFest 2025 is right after GBCC!
Stick around after the conference for two days of relaxed, community-led collaboration in New York City, June 27–28. CoFest registration is separate from GBCC, so if you’re planning to stay for the fun, make sure to sign up!
Register here: https://gbcc2025.bioconductor.org/registration/cofest/
GBCC2025 is on the horizon! Don't miss your chance to dive into cutting-edge bioinformatics, connect with global Galaxy and Bioconductor enthusiasts, and enjoy the scenic shores of historic Cold Spring Harbor.
Learn more and register today: https://gbcc2025.bioconductor.org/
Ever wonder what’s happening behind the scenes in Galaxy?
Galaxy Job Radar is a new tool designed to visualize live and historical job activity across Galaxy servers, helping users better understand what’s running and giving admins powerful insights into performance and system health.
Developed by Tomas Vondrak as part of his Master’s thesis, this project is making Galaxy more transparent, accessible, and efficient.
Learn more in his latest blog post: https://galaxyproject.org/news/2025-04-07-galaxy-job-radar/
We're measuring interest in a week-long Galaxy Admin Training in Europe during the Fall '25. Please fill in the survey if that sounds like something you'd like. All questions are optional and it takes less than a minute. Cheers! https://docs.google.com/forms/d/e/1FAIpQLSed-4aY8bREeTFyrXyY37nCtw6UioNzPRGBLnFBR8CeXQaVBA/viewform
Reminder: Poster Abstracts for GBCC2025 are still open!
While talk abstract submissions have closed, you can still submit a poster abstract for GBCC2025!
🗓 Poster Abstract Deadline: May 1, 2025
https://gbcc2025.bioconductor.org/abstracts/submission_guidelines/
New to metagenomics? Join a virtual Galaxy workshop on April 23 to learn the basics of microbial community analysis!
🗓️ April 23, 2025
⏰ 1–3 PM EST
💻 Online & interactive
Register here: https://ncat.az1.qualtrics.com/jfe/form/SV_e8lt6YvrWoCAdBc
🧬 Want to master genome assembly? Join us for the Assembly Track at Galaxy Training Academy and learn how to assemble high-quality genomes with hands-on tutorials and expert guidance. It’s a great opportunity for researchers at all levels, and it's free!
🗓 When: May 12-16, 2025
https://training.galaxyproject.org/training-material/events/2025-05-12-galaxy-academy-2025.html
🚀 The latest Galaxy Newsletter is live! 🎉
Catch up on the latest updates, including GTA2025, GBCC2025, and Galaxy 24.2. Get the scoop on upcoming events, features, and exciting opportunities!
https://galaxyproject.org/news/2025-04-07-galaxy-newsletter/
The networking issues at https://UseGalaxy.org have been resolved and the site is working normally now. Thanks for your patience and happy computing!
A DNS service outage at our host is causing web service errors and job failures. Please do not report these errors. Normal service will be restored once DNS services have been restored. We apologize for the inconvenience. We will post again when the issue has been addressed.
🚨 Today’s the Deadline for GBCC Scholarship Applications! 🚨
Be sure to apply now for the JXTX + GBCC2025 Scholarships to attend GBCC2025! Don’t miss this wonderful opportunity to be part of the first-ever joint Galaxy & Bioconductor conference.
⏳ Last Call for Abstract Submissions for GBCC2025! ⏳
There’s still time to present your research at GBCC2025—submit your abstract by tomorrow, April 8th, 2025!
Assembly by Linelle Abueg on Galaxy
Curation by Kirsty McCaffrey
📷
(1) modified from lonnyholmes https://www.inaturalist.org/observations/88884243
(2) Gregory Florant
(3) modified from johnkrampl https://www.inaturalist.org/observations/184746157
@vertebrategenomesproject
#UseGalaxy #VertebrateGenomesProject (3/3)
Luke Olsen of the Paul Cohen lab at Rockefeller University aims to use the golden-mantled ground squirrel genome to uncover novel insights into brown fat metabolism and its therapeutic potential. (2/3)
The Callospermophilus lateralis (golden-mantled ground squirrel), mCalLat2 genome has been assembled, curated, and released on NCBI: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_048772815.1/. (1/3)
There’s still time to present your research at GBCC2025—submit your abstract by April 8th, 2025! Join us for an exciting week of collaboration and discovery in genomics and data science.
Calling all researchers and data enthusiasts! 🧪💻 Your insights are crucial to improving the AnVIL platform. Participate in their Community Poll and make a difference. Plus, enter a drawing for a gift card!
https://bit.ly/sota2025
On this day, five years ago, we lost James Taylor. The Galaxy continues, and the JXTX Foundation has enabled numerous students to attend genomic data science meetings. Help us continue by donating here: jxtxfoundation.org/donate/
Video is now available for the BRC Analytics webinar that took place on Mar 26 where we demoed workflows for transcriptomics and variant calling. See the video here:
https://youtu.be/lYzb0j_UtWk
Please follow for more updates and to give feedback on https://BRC-Analytics.org
